The following list of publications contains applications and information relevant to PPL’s products. The list is not exhaustive.

1. A New Algorithm for Generating Artefact-free Zero-charge Spectra from ESIMS Macromolecule Data. M.R.Alecio, X.K.Zhang, A.G.Ferrige, Proceedings of the 46th ASMS Conference on Mass Spectrometry, 1998, MPC086, 144

2. A Novel Approach to the Automated Analysis of Peptide Mapping Data. X.K.Zhang, A.G.Ferrige, M.R.Alecio, Proceedings of the 46th ASMS Conference on Mass Spectrometry, 1998, MPE153, 206

3. Investigation of Protein Heterogeneity Using a New Approach to Data Deconvolution. X.K.Zhang, D.Wen, T.Ferrige, Proceedings of the 47th ASMS Conference on Mass Spectrometry, 1999, MPJ308, 164

4. Improving Mass Accuracy and Detection Limits in Proteomic Research Using Data Reconstruction Methods. T.Ferrige, K.Waddell, K.Zhang, Proceedings of the 47th ASMS Conference on Mass Spectrometry, 1999, ThPE114, 702

5. The Use of Advanced Mathematical Algorithms to Enhance the Identification of Proteins. K.A.Waddell, J.P.DeGnore, M.X.Lin, T.G.Ferrige, M.R.Alecio, R.S.Ray, X.K.Zhang, Proceedings of the 47th ASMS Conference on Mass Spectrometry, 2000, TOCam

6. The Use of Advanced Mathematical Algorithms to Enhance the Identification of Proteins. K.A.Waddell, J.P.DeGnore, M.X.Lin, T.G.Ferrige, M.R.Alecio, R.S.Ray, X.K.Zhang, PE Biosystems & PE Sciex ASMS 2000 Scientific and Users Meeting, 2000, Tu 1055a (full text and slides of lecture)

7. Data Reconstruction Methods for Data Processing, A.G.Ferrige & M.R.Alecio, in 'Design and analysis in chemical research', ed. R.L. Tranter, Sheffield Academic Press and CRC Press, 2000, 507 - 545

8. Improved Mass Spectrometric Peak Detection and Quantification by Accounting for Variable Noise Levels. A.G.Ferrige, M.R.Alecio, R.S.Ray, K.A.Waddell, J.P.DeGnore, X.K.Zhang, Proceedings of the 49th ASMS Conference on Mass Spectrometry, 2001

9. Fast and Quantitative Analysis of Data for Investigating the Heterogeneity of Intact Glycoproteins by ESI-MS. Kate Zhang, Robert Alecio, Stuart Ray, John Thomas, Tony Ferrige. Proceedings of the 50th ASMS Conference on Mass Spectrometry, 2002

10. Improved Centroid Peak Detection and Mass Accuracy using a Novel, Fast Data Reconstruction Method. James A. Ferguson, William G. Sawyers, Keith A. Waddell, Anthony G. Ferrige, Robert Alecio, Stuart Ray. Proceedings of the 50th ASMS Conference on Mass Spectrometry, 2002

11. Electrospray-MS Charge Deconvolutions without Compromise - an Enhanced Data Reconstruction Algorithm utilising Variable Peak Modelling. A.Ferrige, S.Ray, R.Alecio, S.Ye, K.Waddell. Proceedings of the 51st ASMS Conference on Mass Spectrometry, 2003

12. A Novel Forwards-working Approach to Peptide Sequencing. Anthony Ferrige, Stuart Ray, Rob Alecio, Keith Waddell and Kate Zhang. Proceedings of the 52nd ASMS Conference on Mass Spectrometry, 2004